STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0202ABC transporter, substrate binding protein (iron). (354 aa)    
Predicted Functional Partners:
Atu4577
ABC transporter, substrate binding protein.
  
  
0.920
afuA
ABC transporter, substrate binding protein (iron).
  
  
 0.916
afuA-2
ABC transporter, substrate binding protein (iron).
  
  
 0.913
fbpA
ABC transporter, substrate binding protein (iron).
  
  
 
0.904
Atu2014
ABC transporter, substrate binding protein.
     
 0.902
Atu2467
ABC transporter, substrate binding protein (iron).
     
 0.901
fbpA3
ABC transporter, membrane spanning protein.
 
  
 0.875
Atu0613
ABC transporter, membrane spanning protein.
 
  
 0.862
Atu0288
Conserved hypothetical protein.
  
    0.767
fbpA1
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
  
 0.641
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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