STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadD-2Long-chain fatty acid-CoA ligase. (510 aa)    
Predicted Functional Partners:
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
 
 
0.960
Atu3684
Siderophore biosynthesis protein.
 
 0.936
Atu3673
Siderophore biosynthesis protein.
 
0.912
Atu3672
Polyketide synthase, siderophore biosynthesis protein.
 
 0.911
Atu3681
Polyketide synthetase, siderophore biosynthesis protein.
 
 0.856
Atu8162
Hypothetical protein.
  
 
 0.852
fadB-2
enoyl-CoA hydratase.
  
 
 0.830
Atu3677
Polyketide synthase, siderophore biosynthesis protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.801
lysA
Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
 0.762
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
 
 
0.733
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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