STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1789Lipoprotein. (357 aa)    
Predicted Functional Partners:
Atu1792
ABC transporter, nucleotide binding/ATPase protein (sugar).
 
 
 0.993
Atu1790
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.990
Atu1791
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.989
Atu0127
ABC transporter, nucleotide binding/ATPase protein (sugar/ribonucleotide).
 
 
 0.966
Atu0129
ABC transporter, membrane spanning protein (sugar/ribonucleotide); Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.962
Atu0128
ABC transporter, membrane spanning protein (sugar/ribonucleotide); Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.959
Atu0126
Membrane lipoprotein.
  
 
 
0.925
gpt
Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
 
   
 0.474
Atu1788
Transcriptional regulator, GntR family.
       0.443
guaA-2
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.432
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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