STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2364ABC transporter, membrane spanning protein. (240 aa)    
Predicted Functional Partners:
nocP1
ABC transporter, nucleotide binding/ATPase protein.
 
  
 0.945
Atu2365
ABC transporter, substrate binding protein (amino acid).
 
 0.939
Atu2363
ABC transporter, membrane spanning protein.
 
 
0.921
Atu1879
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
 0.853
Atu3358
ABC transporter, membrane spanning protein (amino acid).
 
    0.774
Atu0479
ABC transporter, substrate binding protein (amino acid).
 
 
 0.769
Atu2362
S-methyltransferase.
       0.753
Atu4752
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
    0.740
Atu4283
ABC transporter, nucleotide binding/ATPase protein.
 
    0.730
Atu3360
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
    0.723
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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