STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prsE2HlyD family secretion protein. (437 aa)    
Predicted Functional Partners:
prsD1
ABC transporter, nucleotide binding/ATPase protein (protein).
  
 0.954
prsD
Rhizobicin secretion.
  
 0.796
rspD
ABC transporter, nucleotide binding/ATPase protein (bacteriocin).
  
 0.796
Atu3322
ABC transporter, nucleotide binding/ATPase protein.
  
 0.794
Atu2704
Hypothetical protein.
       0.634
nodT
Nodulation protein T precursor.
  
 
 0.610
copB
Copper tolerance protein.
  
 
 0.570
Atu2577
ABC transporter, nucleotide binding/ATPase protein.
  
 
 0.567
rzcA
Rhizobiocin.
  
  
 0.559
Atu1817
Conserved hypothetical protein.
  
  
 0.529
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.