STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hyuA2Hydantoin Racemase. (247 aa)    
Predicted Functional Partners:
huy
Hydantoin racemase.
  
  
 
0.906
Atu3086
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
     0.902
Atu3087
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
     0.885
Atu3088
ABC transporter, substrate binding protein (spermidine/putrescine).
 
     0.751
Atu3294
Transcriptional regulator, GntR family.
 
     0.555
Atu3089
ABC transporter, nucleotide binding/ATPase protein (spermidine/putrescine); Belongs to the ABC transporter superfamily.
 
     0.543
Atu3083
Conserved hypothetical protein.
       0.495
sigW
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.495
Atu8183
Hypothetical protein.
       0.495
Atu4702
Transcriptional regulator, GntR family.
 
     0.458
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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