STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3134Transcriptional regulator, AraC family. (308 aa)    
Predicted Functional Partners:
Atu3130
ABC transporter, substrate binding protein (sugar).
 
     0.855
picA
Polygalacturonase-like protein; Belongs to the glycosyl hydrolase 28 family.
 
     0.824
Atu3132
ABC transporter, membrane spanning protein (sugar).
 
     0.789
yteR
Probable di-trans,poly-cis-decaprenylcistransferase; Seems to regulate the surface properties of the bacterium in the presence of plant cells or plant cell extracts. Mutations in this protein are responsible for an increased aggregation of the bacteria in the presence of pea root cap cells (By similarity); Belongs to the glycosyl hydrolase 88 family.
 
   
 0.758
Atu3133
ABC transporter, membrane spanning protein (sugar).
 
     0.757
Atu3131
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
 
     0.566
Atu4644
Transcriptional regulator, AraC family.
  
     0.494
Atu4560
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
     0.484
Atu1438
Transcriptional regulator, AraC family.
  
     0.470
Atu4575
Transcriptional regulator, AraC family.
  
     0.440
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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