STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3348Conserved hypothetical protein. (254 aa)    
Predicted Functional Partners:
Atu3347
Conserved hypothetical protein.
 
    0.952
Atu3351
ABC transporter, membrane spanning protein (sugar).
 
    0.882
Atu3350
ABC transporter, membrane spanning protein.
 
    0.863
Atu3352
ABC transporter, substrate binding protein (sugar).
 
    0.838
Atu3241
Dehydrogenase.
 
    0.832
Atu3349
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
     0.735
Atu4363
Conserved hypothetical protein.
 
    0.721
ThuB
Trehalose utilization-related protein.
 
    0.702
thuA
Trehalose utilization-related protein.
 
    0.684
tolB
tolB protein; Belongs to the TolB family.
 
     0.587
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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