STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hasRHeme receptor. (923 aa)    
Predicted Functional Partners:
tonB
tonB protein.
 
 
 0.907
Atu3386
Two component sensor kinase.
 
  
 0.857
Atu2287
Outer membrane heme receptor.
 
  
 0.856
tolA
Conserved hypothetical protein.
 
 
 0.825
hemO
Heme oxygenase.
 
   
 0.690
Atu3553
Hypothetical protein.
  
 
 
 0.676
exbD
Biopolymer transport protein.
  
  
 0.669
fecR
Two component sensor kinase.
 
  
 0.661
exbB
Biopolymer transport protein.
  
  
 0.660
pfrI
Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.646
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.