STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3406Conserved hypothetical protein. (278 aa)    
Predicted Functional Partners:
Atu3407
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.917
hadL-2
2-haloalkanoic acid dehalogenase.
 
    0.881
hadL
Haloalkanoic acid dehalogenase.
 
    0.860
ordL-4
Oxidoreductase.
 
     0.847
Atu3409
ABC transporter, substrate binding protein (oligopeptide).
 
     0.846
Atu3411
ABC transporter, membrane spanning protein.
 
     0.812
Atu3410
ABC transporter, membrane spanning protein.
 
     0.791
Atu3414
Putative AgaE.
 
     0.767
Atu3412
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
     0.711
Atu3400
Conserved hypothetical protein.
  
     0.700
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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