STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrtC-2ABC transporter, nucleotide binding/ATPase protein (nitrate). (431 aa)    
Predicted Functional Partners:
nrtC
ABC transporter, nucleotide binding/ATPase protein (nitrate).
 
 0.992
nasT
Two component response regulator.
 
  
 0.940
nrtB
ABC transporter, membrane spanning protein (nitrate).
 
  
 0.873
nasA
Nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.853
nirB
Nitrite reductase large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.841
nirD
Nitrite reductase small subunit.
 
  
 0.833
Atu0159
ABC transporter, nucleotide binding/ATPase protein.
  
 0.651
Atu4261
ABC transporter, nucleotide binding/ATPase protein.
  
 0.559
ntrA
ABC transporter, substrate binding protein (nitrate).
 
    
0.541
Atu1047
ABC transporter, nucleotide binding/ATPase protein.
  
 0.532
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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