STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
menGS-adenosylmethionine:2-demethylmenaquinone methyltransferase. (224 aa)    
Predicted Functional Partners:
ilvH
Acetolactate synthase, small subunit.
     
  0.900
ilvI
Acetolactate synthase III, large subunit.
     
  0.900
iivG
Acetolactate synthase large subunit; Belongs to the TPP enzyme family.
     
  0.900
Atu4263
Conserved hypothetical protein.
 
   
 0.691
Atu4280
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.633
nac
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.553
Atu3138
Conserved hypothetical protein; Catalyzes the isomerization of D-galactaro-1,5-lactone to D- galactaro-1,4-lactone. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A.tumefaciens to utilize D- galacturonate as a sole carbon source.
 
   
 0.538
Atu4284
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
  
    0.536
pobA
4-hydroxybenzoate hydroxylase.
 
   
 0.524
Atu1421
Conserved hypothetical protein.
 
   
 0.510
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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