STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4564ABC transporter, substrate binding protein (sugar). (426 aa)    
Predicted Functional Partners:
Atu4558
ABC transporter, membrane spanning protein (sugar).
 
  0.979
Atu3968
ABC transporter, membrane spanning protein (sugar).
 
  0.960
Atu4557
ABC transporter, membrane spanning protein (sugar).
 
  0.960
Atu3969
ABC transporter, membrane spanning protein (sugar).
  
  0.948
Atu3967
ABC transporter, substrate binding protein (sugar).
  
  
 
0.916
Atu4562
Hypothetical protein.
 
     0.834
Atu4559
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
  
   0.673
Atu4561
Conserved hypothetical protein.
 
    0.610
Atu3102
ABC transporter, substrate binding protein (sugar).
  
     0.542
Atu4568
ABC transporter, substrate binding protein.
  
     0.541
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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