STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu8138Conserved hypothetical protein. (91 aa)    
Predicted Functional Partners:
Atu0832
Chloride channel protein.
       0.595
Atu4035
Two component response regulator.
  
     0.499
Atu1782
Conserved hypothetical protein.
 
 
 0.476
Atu3013
Conserved hypothetical protein.
 
 
   0.465
Atu0675
Conserved hypothetical protein.
  
     0.449
Atu0809
Hypothetical protein.
  
 
 0.409
Atu1510
Conserved hypothetical protein; Belongs to the RelE toxin family.
  
 
 0.409
Atu8154
Plasmid stabilization system protein.
  
 
 0.409
Atu1078
Hypothetical protein.
  
 
 0.404
Atu4461
Conserved hypothetical protein.
  
 
 0.404
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.