STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR00562.1Dihydrodipicolinate reductase. (358 aa)    
Predicted Functional Partners:
AKR00563.1
Short-chain dehydrogenase.
 
    0.943
AKR00721.1
Dihydrodipicolinate reductase.
  
  
 
0.924
AKR01662.1
Amino acid oxidase.
     
  0.900
AKQ99873.1
Bile acid 7-alpha dehydratase.
  
     0.740
AKR03451.1
Sulfotransferase.
  
     0.671
AKR03453.1
Hypothetical protein.
  
     0.646
AKR03440.1
DNA-binding protein.
  
     0.637
AKR03463.1
beta-hydroxyacyl-ACP dehydratase.
  
     0.636
AKR02974.1
Hypothetical protein.
  
     0.626
AKR00561.1
Flavodoxin.
       0.611
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.