STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR03519.1Hypothetical protein. (275 aa)    
Predicted Functional Partners:
AKR03870.1
Hydrolase.
  
  
 0.771
AKR03649.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.762
AKR03748.1
Hypothetical protein.
   
  
 0.754
AKR01278.1
NLP/P60 family protein.
  
  
 0.508
AKR03518.1
Lipoprotein LpqF.
     
 0.505
AKR02348.1
Fatty acid synthase.
  
    0.503
AKR03517.1
Heme-degrading monooxygenase HmoB.
       0.494
AKR03747.1
Exported repetitive protein.
   
    0.481
AKR01193.1
Peptidoglycan endopeptidase RipA.
  
  
 0.478
AKR01194.1
Peptidoglycan endopeptidase RipB.
  
  
 0.457
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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