STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP0032Probable lipopolysaccharide biosynthesis protein (WbpT). (380 aa)    
Predicted Functional Partners:
DP0031
Related to glycosyl transferase (WbpU).
     0.950
DP0033
Probable asparagine synthetase (WbpS).
 
  
 0.921
DP0046
Probable lipopolysaccharide biosynthetic protein (WbpP).
 
    0.674
DP0030
Probable galactosyltransferase.
  
 0.661
DP0028
Probable pilin glycosylation protein; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.519
DPPB91
Related to UDP-galactose-lipid carrier transferase.
 
  
 0.468
DP0029
Probable pilin glycosylation protein.
     
 0.466
DP0039
Similar to O-antigen transporter.
 
  
 0.453
DPPB75
Related to polysaccharide biosynthesis protein.
  
     0.444
DP0048
Related to lipopolysaccharide biosynthesis protein (WbpM).
 
  
 0.425
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.