STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DP0617Probable aspartate aminotransferase. (398 aa)    
Predicted Functional Partners:
DP2171
Probable P-protein.
    
 0.951
DP2275
Related to P-protein.
    
 0.949
hisC
Probable histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.920
DP2938
Probable aspartate aminotransferase.
   
 0.917
metK
Probable S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
 0.909
DP2201
Related to 5-methyltetrahydrofolate--homocysteine methyltransferase.
     
 0.908
DP2202
Related to 5-methyltetrahydrofolate--homocysteine methyltransferase.
     
  0.900
DP0254
Related to isochorismate synthase (MenF).
     
 0.822
DP0451
Related to aspartate kinase.
  
 
 0.635
DP0033
Probable asparagine synthetase (WbpS).
   
 
 0.599
Your Current Organism:
Desulfotalea psychrophila
NCBI taxonomy Id: 177439
Other names: D. psychrophila LSv54, Desulfotalea psychrophila LSv54
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