STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVJ69569.15-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase. (305 aa)    
Predicted Functional Partners:
CVJ69551.1
Alpha/beta hydrolase fold protein.
  
 
  0.811
CVJ65154.1
Isopropylmalate isomerase large subunit.
  
 
  0.707
CVJ12916.1
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.679
CVJ69581.1
CaiB/baiF CoA-transferase; Belongs to the CoA-transferase III family.
       0.675
CVJ81879.1
D-lactate dehydrogenase (cytochrome).
    
  0.645
CVJ96672.1
Oxidoreductase.
    
  0.645
CVJ75142.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
  
 
0.631
CVJ25659.1
Fumarylacetoacetate (FAA) hydrolase.
  
  
 
0.605
CVJ35723.1
Homogentisate 1,2-dioxygenase.
  
 
 0.577
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
 
 0.577
Your Current Organism:
Caballeronia ptereochthonis
NCBI taxonomy Id: 1777144
Other names: Burkholderia ptereochthonis, Burkholderia ptereochthonis Peeters et al. 2016, Burkholderia sp. LMG 29326, C. ptereochthonis, CCUG 68403, Caballeronia ptereochthonis (Peeters et al. 2016) Dobritsa et al. 2017, LMG 29326, LMG:29326
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