STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WN55_09387Pentatricopeptide repeat-containing protein 1. (523 aa)    
Predicted Functional Partners:
WN55_11205
Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial.
   
 0.878
WN55_08787
Gamma-tubulin complex component.
    
 0.843
WN55_05864
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
   
 0.808
WN55_04636
Gamma-tubulin complex component 6.
    
 0.790
WN55_01745
Gamma-tubulin complex component.
    
 0.790
WN55_01934
Gamma-tubulin complex component.
    
 0.790
WN55_06765
Gamma-tubulin complex component.
    
 0.787
WN55_10647
Gamma-tubulin complex component.
    
 0.780
WN55_04368
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.751
WN55_05188
Histone-lysine N-methyltransferase E(Z).
   
 0.744
Your Current Organism:
Dufourea novaeangliae
NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.