WN55_10885 protein (Dufourea novaeangliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WN55_10885

Uncharacterized protein. (194 aa)

Predicted Functional Partners:

WN55_01615

0.545

WN55_07341

0.515

WN55_10240

0.443

WN55_01409

0.423

WN55_01618

0.421

WN55_09848

0.420

WN55_01870

0.409

WN55_06377

0.406

WN55_10668

0.405

WN55_02233

0.400

Your Current Organism:

Dufourea novaeangliae

NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WN55_01409	WN55_01615	A0A154PEL4	A0A154PGA9	Ribosome biogenesis protein BRX1 like protein.	Superkiller viralicidic activity 2-like 2.	0.827
WN55_01409	WN55_02233	A0A154PEL4	A0A154PGZ6	Ribosome biogenesis protein BRX1 like protein.	Protein penguin.	0.989
WN55_01409	WN55_06377	A0A154PEL4	A0A154PQF0	Ribosome biogenesis protein BRX1 like protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.928
WN55_01409	WN55_09848	A0A154PEL4	A0A154P7M1	Ribosome biogenesis protein BRX1 like protein.	Putative rRNA-processing protein EBP2 like protein.	0.999
WN55_01409	WN55_10668	A0A154PEL4	A0A154P979	Ribosome biogenesis protein BRX1 like protein.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.445
WN55_01409	WN55_10885	A0A154PEL4	A0A154P862	Ribosome biogenesis protein BRX1 like protein.	Uncharacterized protein.	0.423
WN55_01615	WN55_01409	A0A154PGA9	A0A154PEL4	Superkiller viralicidic activity 2-like 2.	Ribosome biogenesis protein BRX1 like protein.	0.827
WN55_01615	WN55_01618	A0A154PGA9	A0A154PGD8	Superkiller viralicidic activity 2-like 2.	Importin-7.	0.588
WN55_01615	WN55_01870	A0A154PGA9	A0A154PF20	Superkiller viralicidic activity 2-like 2.	39S ribosomal protein L16, mitochondrial.	0.653
WN55_01615	WN55_02233	A0A154PGA9	A0A154PGZ6	Superkiller viralicidic activity 2-like 2.	Protein penguin.	0.800
WN55_01615	WN55_06377	A0A154PGA9	A0A154PQF0	Superkiller viralicidic activity 2-like 2.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.939
WN55_01615	WN55_07341	A0A154PGA9	A0A154P4M6	Superkiller viralicidic activity 2-like 2.	PAP-associated domain-containing protein 5.	0.908
WN55_01615	WN55_09848	A0A154PGA9	A0A154P7M1	Superkiller viralicidic activity 2-like 2.	Putative rRNA-processing protein EBP2 like protein.	0.637
WN55_01615	WN55_10668	A0A154PGA9	A0A154P979	Superkiller viralicidic activity 2-like 2.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.798
WN55_01615	WN55_10885	A0A154PGA9	A0A154P862	Superkiller viralicidic activity 2-like 2.	Uncharacterized protein.	0.545
WN55_01618	WN55_01615	A0A154PGD8	A0A154PGA9	Importin-7.	Superkiller viralicidic activity 2-like 2.	0.588
WN55_01618	WN55_01870	A0A154PGD8	A0A154PF20	Importin-7.	39S ribosomal protein L16, mitochondrial.	0.653
WN55_01618	WN55_06377	A0A154PGD8	A0A154PQF0	Importin-7.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.806
WN55_01618	WN55_07341	A0A154PGD8	A0A154P4M6	Importin-7.	PAP-associated domain-containing protein 5.	0.637
WN55_01618	WN55_10240	A0A154PGD8	A0A154P5D3	Importin-7.	Helicase SKI2W.	0.531