STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arnC_1Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase. (325 aa)    
Predicted Functional Partners:
bacD_1
Alanine-anticapsin ligase BacD.
 
     0.825
rffA
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
    0.803
CVI65574.1
Bacterial membrane protein YfhO.
 
    0.688
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
 
 0.597
pspA
Phosphoserine phosphatase 1; Belongs to the phosphoglycerate mutase family.
   
  0.585
rfbB
dTDP-glucose 4,6-dehydratase.
 
 0.585
CVI67103.1
GtrA-like protein.
 
 
 0.556
pspB
Putative phosphoserine phosphatase 2; Belongs to the phosphoglycerate mutase family.
    
  0.492
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase.
    
  0.492
cobC
Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family.
    
  0.492
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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