STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garR2-hydroxy-3-oxopropionate reductase. (297 aa)    
Predicted Functional Partners:
CVI67842.1
Hypothetical protein.
  
 0.995
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
  0.852
fba
Fructose-bisphosphate aldolase.
 
    0.850
ttuD
Putative hydroxypyruvate reductase.
 
  
 0.844
alkH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.840
sucD
Succinate-semialdehyde dehydrogenase (acetylating).
  
 
 0.836
pheA_1
P-protein.
   
 
  0.792
pheA_2
P-protein.
   
 
  0.792
porD
Pyruvate synthase subunit PorD.
    
  0.783
CVI73299.1
Iron hydrogenase 1.
    
  0.775
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.