STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araB_1Ribulokinase. (554 aa)    
Predicted Functional Partners:
fucA
L-fuculose phosphate aldolase.
 
 
 0.947
egsA_1
Glycerol-1-phosphate dehydrogenase [NAD(P)+].
 
    0.893
egsA_2
Glycerol-1-phosphate dehydrogenase [NAD(P)+].
 
    0.804
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.789
CVI66470.1
Phosphotyrosine-protein phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
    
  0.778
rpiB_1
Ribose-5-phosphate isomerase B.
    
  0.735
rpiB_2
Ribose-5-phosphate isomerase B.
    
  0.735
iolC
5-dehydro-2-deoxygluconokinase.
     
 0.691
kdgK
2-dehydro-3-deoxygluconokinase.
     
 0.691
ydjH
Putative sugar kinase YdjH; Belongs to the carbohydrate kinase PfkB family.
     
 0.691
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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