STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_02018Unannotated protein. (375 aa)    
Predicted Functional Partners:
GCA_001647275_02017
Unannotated protein.
       0.773
GCA_001647275_00721
Unannotated protein.
  
     0.757
GCA_001647275_03061
Unannotated protein.
  
     0.751
GCA_001647275_01302
Unannotated protein.
  
     0.726
GCA_001647275_00039
Unannotated protein.
  
     0.716
GCA_001647275_01228
Unannotated protein.
  
     0.710
GCA_001647275_03743
Unannotated protein.
  
     0.709
GCA_001647275_01448
Unannotated protein.
  
     0.704
GCA_001647275_01263
Unannotated protein.
  
     0.690
GCA_001647275_03157
Unannotated protein.
  
     0.686
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.