STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_1433ErfK/YbiS/YcfS/YnhG family protein; Scaffold_8_37. (350 aa)    
Predicted Functional Partners:
AWU55_1278
N-acetylmuramoyl-L-alanine amidase; Scaffold_6_70.
    
 0.866
AWU55_1089
ErfK/YbiS/YcfS/YnhG; Scaffold_5_10.
 
  
 0.783
AWU55_2934
D-alanyl-D-alanine carboxypeptidase; Scaffold_113_24; Belongs to the peptidase S11 family.
 
  
 0.676
AWU55_237
Scaffold_0_237; D-alanyl-D-alanine carboxypeptidase.
     
 0.637
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
     
 0.611
ftsI
Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.
     
 0.607
AWU55_949
AmpD protein; Scaffold_4_1.
     
 0.605
AWU55_2301
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Scaffold_30_13; Belongs to the peptidase S11 family.
    
 0.604
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
     
 0.600
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate liga; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
    
 0.598
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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