STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_269Glutamine amidotransferase; Scaffold_0_269. (187 aa)    
Predicted Functional Partners:
AWU55_885
4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesi; Scaffold_3_94.
  
   
 0.748
AWU55_270
Hypothetical protein; Scaffold_0_270.
 
     0.696
AWU55_1402
Putative PAS/PAC sensor protein; Scaffold_8_6.
 
      0.676
AWU55_584
Rhodanese-like protein; Scaffold_1_215.
    
 0.621
msbA
ATP-binding cassette, subfamily B, bacterial MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
   
  0.620
AWU55_996
Catalase; Scaffold_4_48; Belongs to the catalase family.
  
  0.614
AWU55_2003
Uncharacterized protein; Scaffold_19_83.
     
 0.597
AWU55_2090
Histone deacetylase superfamily protein; Scaffold_25_11.
    
  0.586
AWU55_743
Histone deacetylase superfamily protein; Scaffold_2_155.
    
  0.586
rpsJ
Small subunit ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
   0.581
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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