STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_2892Choline/carnitine/betaine transport; Scaffold_94_8; Belongs to the BCCT transporter (TC 2.A.15) family. (544 aa)    
Predicted Functional Partners:
AWU55_2894
AMP-forming long-chain acyl-CoA synthetase; Scaffold_94_10.
  
    0.453
AWU55_2893
Hypothetical protein; Scaffold_94_9.
       0.448
AWU55_2895
Hypothetical protein; Scaffold_94_11.
       0.448
AWU55_2896
Short chain dehydrogenase; Scaffold_94_12; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.448
AWU55_2897
Hypothetical protein; Scaffold_94_13.
       0.403
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.