STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ05407.1PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342:IPR013341; KEGG: npu:Npun_R6604 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Muconate cycloisomerase. (355 aa)    
Predicted Functional Partners:
AFZ05409.1
PFAM: Protein of unknown function (DUF1611); COGs: COG3367 conserved hypothetical protein; InterPro IPR011669; KEGG: cyc:PCC7424_3589 protein of unknown function DUF1611; PFAM: Protein of unknown function DUF1611; SPTR: Putative uncharacterized protein.
     0.942
AFZ05408.1
PFAM: Protein of unknown function (DUF820); Borrelia P83/100 protein; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: cyj:Cyan7822_3898 hypothetical protein; PFAM: Domain of unknown function DUF820; SPTR: Putative uncharacterized protein.
       0.631
AFZ07965.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
    0.556
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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