STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06339.1KEGG: cyc:PCC7424_0614 hypothetical protein; SPTR: Putative uncharacterized protein. (63 aa)    
Predicted Functional Partners:
AFZ06340.1
PFAM: Protein of unknown function (DUF3326); KEGG: ter:Tery_2924 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.791
AFZ06341.1
Abortive infection protein; PFAM: CAAX amino terminal protease family; InterPro IPR003675; KEGG: ter:Tery_2922 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein.
       0.652
AFZ06338.1
Ferredoxin (2Fe-2S); PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: ferredoxin [2Fe-2S]; COGs: COG0633 Ferredoxin; InterPro IPR010241:IPR001041; KEGG: ava:Ava_0568 ferredoxin (2Fe-2S); PFAM: Ferredoxin; SPTR: Ferredoxin (2Fe-2S); TIGRFAM: Ferredoxin [2Fe-2S], plant.
       0.627
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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