AZE42_04948 protein (Rhizopogon vesiculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AZE42_04948

Uncharacterized protein. (174 aa)

Predicted Functional Partners:

AZE42_07970

0.522

AZE42_06619

0.498

AZE42_06898

0.465

AZE42_02404

0.465

AZE42_03338

0.465

AZE42_04931

0.461

AZE42_03519

0.461

AZE42_00486

0.461

AZE42_06414

0.451

AZE42_01649

0.443

Your Current Organism:

Rhizopogon vesiculosus

NCBI taxonomy Id: 180088
Other names: R. vesiculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AZE42_00486	AZE42_01649	A0A1J8QQ19	A0A1J8QDL1	MPN domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.829
AZE42_00486	AZE42_02404	A0A1J8QQ19	A0A1J8PZE3	MPN domain-containing protein.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.438
AZE42_00486	AZE42_03338	A0A1J8QQ19	A0A1J8Q3S9	MPN domain-containing protein.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.524
AZE42_00486	AZE42_03519	A0A1J8QQ19	A0A1J8QHY6	MPN domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.587
AZE42_00486	AZE42_04931	A0A1J8QQ19	A0A1J8QHW9	MPN domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.603
AZE42_00486	AZE42_04948	A0A1J8QQ19	A0A1J8QLD5	MPN domain-containing protein.	Uncharacterized protein.	0.461
AZE42_01649	AZE42_00486	A0A1J8QDL1	A0A1J8QQ19	Uncharacterized protein; Belongs to the SKP1 family.	MPN domain-containing protein.	0.829
AZE42_01649	AZE42_04948	A0A1J8QDL1	A0A1J8QLD5	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.443
AZE42_02404	AZE42_00486	A0A1J8PZE3	A0A1J8QQ19	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	MPN domain-containing protein.	0.438
AZE42_02404	AZE42_03338	A0A1J8PZE3	A0A1J8Q3S9	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.866
AZE42_02404	AZE42_03519	A0A1J8PZE3	A0A1J8QHY6	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.661
AZE42_02404	AZE42_04931	A0A1J8PZE3	A0A1J8QHW9	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.549
AZE42_02404	AZE42_04948	A0A1J8PZE3	A0A1J8QLD5	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Uncharacterized protein.	0.465
AZE42_03338	AZE42_00486	A0A1J8Q3S9	A0A1J8QQ19	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	MPN domain-containing protein.	0.524
AZE42_03338	AZE42_02404	A0A1J8Q3S9	A0A1J8PZE3	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.866
AZE42_03338	AZE42_03519	A0A1J8Q3S9	A0A1J8QHY6	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.656
AZE42_03338	AZE42_04931	A0A1J8Q3S9	A0A1J8QHW9	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.719
AZE42_03338	AZE42_04948	A0A1J8Q3S9	A0A1J8QLD5	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Uncharacterized protein.	0.465
AZE42_03519	AZE42_00486	A0A1J8QHY6	A0A1J8QQ19	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	MPN domain-containing protein.	0.587
AZE42_03519	AZE42_02404	A0A1J8QHY6	A0A1J8PZE3	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.661