AZE42_01714 protein (Rhizopogon vesiculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AZE42_01714

TPT domain-containing protein. (440 aa)

Predicted Functional Partners:

AZE42_05857

0.557

AZE42_01475

0.513

AZE42_03822

0.505

AZE42_07401

0.505

AZE42_13862

0.505

AZE42_01715

0.488

AZE42_00749

0.480

AZE42_03185

0.474

AZE42_03299

0.445

AZE42_04362

0.443

Your Current Organism:

Rhizopogon vesiculosus

NCBI taxonomy Id: 180088
Other names: R. vesiculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AZE42_00749	AZE42_01475	A0A1J8QXZ6	A0A1J8PPM6	Uncharacterized protein.	Uncharacterized protein.	0.517
AZE42_00749	AZE42_01714	A0A1J8QXZ6	A0A1J8QMA2	Uncharacterized protein.	TPT domain-containing protein.	0.480
AZE42_00749	AZE42_03185	A0A1J8QXZ6	A0A1J8Q464	Uncharacterized protein.	Uncharacterized protein.	0.503
AZE42_01475	AZE42_00749	A0A1J8PPM6	A0A1J8QXZ6	Uncharacterized protein.	Uncharacterized protein.	0.517
AZE42_01475	AZE42_01714	A0A1J8PPM6	A0A1J8QMA2	Uncharacterized protein.	TPT domain-containing protein.	0.513
AZE42_01475	AZE42_03185	A0A1J8PPM6	A0A1J8Q464	Uncharacterized protein.	Uncharacterized protein.	0.513
AZE42_01714	AZE42_00749	A0A1J8QMA2	A0A1J8QXZ6	TPT domain-containing protein.	Uncharacterized protein.	0.480
AZE42_01714	AZE42_01475	A0A1J8QMA2	A0A1J8PPM6	TPT domain-containing protein.	Uncharacterized protein.	0.513
AZE42_01714	AZE42_01715	A0A1J8QMA2	A0A1J8QAA1	TPT domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.488
AZE42_01714	AZE42_03185	A0A1J8QMA2	A0A1J8Q464	TPT domain-containing protein.	Uncharacterized protein.	0.474
AZE42_01714	AZE42_03299	A0A1J8QMA2	A0A1J8QYR7	TPT domain-containing protein.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.445
AZE42_01714	AZE42_03822	A0A1J8QMA2	A0A1J8Q9N6	TPT domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.505
AZE42_01714	AZE42_04362	A0A1J8QMA2	A0A1J8QJN7	TPT domain-containing protein.	AMP_N domain-containing protein.	0.443
AZE42_01714	AZE42_05857	A0A1J8QMA2	A0A1J8PJT5	TPT domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.557
AZE42_01714	AZE42_07401	A0A1J8QMA2	A0A1J8QKF2	TPT domain-containing protein.	Uncharacterized protein.	0.505
AZE42_01714	AZE42_13862	A0A1J8QMA2	A0A1J8QVA2	TPT domain-containing protein.	Creatinase_N domain-containing protein.	0.505
AZE42_01715	AZE42_01714	A0A1J8QAA1	A0A1J8QMA2	Zn(2)-C6 fungal-type domain-containing protein.	TPT domain-containing protein.	0.488
AZE42_03185	AZE42_00749	A0A1J8Q464	A0A1J8QXZ6	Uncharacterized protein.	Uncharacterized protein.	0.503
AZE42_03185	AZE42_01475	A0A1J8Q464	A0A1J8PPM6	Uncharacterized protein.	Uncharacterized protein.	0.513
AZE42_03185	AZE42_01714	A0A1J8Q464	A0A1J8QMA2	Uncharacterized protein.	TPT domain-containing protein.	0.474