OGW78595.1 protein (Omnitrophica bacterium GWA2528)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OGW78595.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (155 aa)

Predicted Functional Partners:

OGW79684.1

0.999

A2Z83_06645

0.999

OGW78196.1

0.999

OGW80775.1

0.997

OGW83484.1

0.996

OGW80593.1

0.996

OGW79679.1

0.990

OGW82638.1

0.987

OGW81290.1

0.979

OGW83873.1

0.947

Your Current Organism:

Omnitrophica bacterium GWA2528

NCBI taxonomy Id: 1801817
Other names: O. bacterium GWA2_52_8, Omnitrophica bacterium GWA2_52_8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A2Z83_06645	OGW78196.1	A2Z83_06645	A2Z83_08590	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.950
A2Z83_06645	OGW78595.1	A2Z83_06645	A2Z83_07455	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A2Z83_06645	OGW79679.1	A2Z83_06645	A2Z83_00400	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.897
A2Z83_06645	OGW79684.1	A2Z83_06645	A2Z83_00425	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.905
A2Z83_06645	OGW80593.1	A2Z83_06645	A2Z83_06650	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.940
A2Z83_06645	OGW80775.1	A2Z83_06645	A2Z83_00520	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.754
A2Z83_06645	OGW81290.1	A2Z83_06645	A2Z83_03315	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.916
A2Z83_06645	OGW82638.1	A2Z83_06645	A2Z83_07200	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.765
A2Z83_06645	OGW83484.1	A2Z83_06645	A2Z83_04060	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
A2Z83_06645	OGW83873.1	A2Z83_06645	A2Z83_00585	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.986
OGW78196.1	A2Z83_06645	A2Z83_08590	A2Z83_06645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
OGW78196.1	OGW78595.1	A2Z83_08590	A2Z83_07455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OGW78196.1	OGW79679.1	A2Z83_08590	A2Z83_00400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OGW78196.1	OGW79684.1	A2Z83_08590	A2Z83_00425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OGW78196.1	OGW80593.1	A2Z83_08590	A2Z83_06650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.892
OGW78196.1	OGW80775.1	A2Z83_08590	A2Z83_00520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.946
OGW78196.1	OGW81290.1	A2Z83_08590	A2Z83_03315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.946
OGW78196.1	OGW82638.1	A2Z83_08590	A2Z83_07200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.892
OGW78196.1	OGW83484.1	A2Z83_08590	A2Z83_04060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.901
OGW78196.1	OGW83873.1	A2Z83_08590	A2Z83_00585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.882