STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjmD_3Unannotated protein. (345 aa)    
Predicted Functional Partners:
nifJ
Unannotated protein.
    
 0.936
gutB_8
Unannotated protein.
 
    
0.805
xylB_9
Unannotated protein.
  
 
  0.774
GCA_000797495_03817
Unannotated protein.
       0.773
tpiA_2
Unannotated protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
   
 0.618
kbl
Unannotated protein; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
 
 0.614
yjmD_1
Unannotated protein.
0.585
gltD_1
Unannotated protein.
    
  0.562
adhE_7
Unannotated protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.562
gatD_1
Unannotated protein.
 
 
0.557
Your Current Organism:
Robinsoniella peoriensis
NCBI taxonomy Id: 180332
Other names: CCUG 48729, Clostridium sp. CCUG 52336, NRRL B-23985, R. peoriensis, Robinsoniella peoriensis Cotta et al. 2009, strain PPC31, swine fecal bacterium FPC47, swine fecal bacterium FPC50, swine manure pit bacterium PPC108, swine manure pit bacterium PPC31, swine manure pit bacterium PPC37, swine manure pit bacterium PPC44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.