STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEDG_01548DNA excision repair protein ERCC-2. (725 aa)    
Predicted Functional Partners:
NEDG_00963
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.999
NEDG_01002
Transcription initiation factor TFIIH subunit 3.
    
 0.999
NEDG_01256
CDK-activating kinase assembly factor MAT1.
    
 0.999
NEDG_00568
DNA excision repair protein ERCC-3.
   
 0.999
NEDG_01623
Transcription initiation factor TFIIH subunit 2.
    
 0.999
NEDG_02166
Transcription initiation factor TFIIE subunit alpha.
   
 0.990
NEDG_02149
Transcription initiation factor TFIIE subunit beta.
    
 0.989
NEDG_01045
Cyclin H; Belongs to the cyclin family.
    
 0.978
NEDG_00779
Cyclin-dependent kinase 7.
    
 0.956
NEDG_01340
DNA-repair protein complementing XP-A cells.
    
 0.893
Your Current Organism:
Nematocida displodere
NCBI taxonomy Id: 1805483
Other names: N. displodere, Nematocida displodere Luallen et al. 2016, Nematocida sp. JUm2807
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