STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEDG_00098DNA-directed RNA polymerases I, II, and III subunit RPABC5. (73 aa)    
Predicted Functional Partners:
NEDG_01290
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 0.999
NEDG_00960
DNA-directed RNA polymerases I and III subunit RPAC1.
  
 0.999
NEDG_00530
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.999
NEDG_01150
DNA-directed RNA polymerase II subunit RPB4.
    
 0.999
NEDG_00819
DNA-directed RNA polymerase II subunit RPB9.
   
 0.999
NEDG_01472
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
   
 0.999
NEDG_01465
DNA-directed RNA polymerase III subunit RPC11.
   
 0.999
NEDG_01708
DNA-directed RNA polymerase II subunit RPB3.
  
 0.999
NEDG_00675
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.999
NEDG_01769
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.999
Your Current Organism:
Nematocida displodere
NCBI taxonomy Id: 1805483
Other names: N. displodere, Nematocida displodere Luallen et al. 2016, Nematocida sp. JUm2807
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