STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab5cRAB5C, member RAS oncogene family. (220 aa)    
Predicted Functional Partners:
LOC115400238
Rab5 GDP/GTP exchange factor-like.
   
 0.967
LOC115394928
Rab5 GDP/GTP exchange factor-like.
   
 0.967
LOC115398740
Rab5 GDP/GTP exchange factor-like.
   
 0.967
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.957
eea1
Early endosome antigen 1.
    
 0.954
ENSSFAP00005007192
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
    
 
 0.912
appl1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 
 0.912
rbsn
Rabenosyn, RAB effector.
   
 0.912
ENSSFAP00005045794
annotation not available
    
 0.893
gapvd1
GTPase activating protein and VPS9 domains 1.
    
 0.861
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.