STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAQ42140.1Amidinotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)    
Predicted Functional Partners:
OAQ38581.1
Acetylornithine carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
 
 0.942
OAQ42138.1
Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.881
argH
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.846
OAQ38575.1
Argininosuccinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
 0.844
OAQ38582.1
Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.822
OAQ42139.1
Amidinotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
argS
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.686
OAQ40822.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.633
OAQ38454.1
Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.
    
 0.544
OAQ39299.1
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.481
Your Current Organism:
Pedobacter psychrophilus
NCBI taxonomy Id: 1826909
Other names: CCM 8644, LMG 29436, LMG:29436, P. psychrophilus, Pedobacter psychrophilus Svec et al. 2017, Pedobacter sp. CCM 8644, strain P4487A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.