STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANU54489.1MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)    
Predicted Functional Partners:
ANU54005.1
Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.913
ARE60635.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.747
ANU54488.1
M18 family aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.491
ANU54483.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.435
ANU54486.1
CHAP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.418
ANU54487.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.418
ANU54485.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.411
ARE60634.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.411
ANU54484.1
GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.403
Your Current Organism:
Hungateiclostridiaceae bacterium KB18
NCBI taxonomy Id: 1834198
Other names: H. bacterium KB18, Ruminiclostridium sp. KB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.