STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIH99499.1IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)    
Predicted Functional Partners:
KIH99608.1
Citrate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.818
KIH99503.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.650
KIH99501.1
Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.634
KII00298.1
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.486
KIH99500.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
KIH99498.1
Aconitate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
KIH99250.1
acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.435
Your Current Organism:
Streptomonospora alba
NCBI taxonomy Id: 183763
Other names: CCTCC AA 001013, DSM 44588, JCM 12680, S. alba, Streptimonospora albus, Streptomonospora alba Li et al. 2003, Streptomonospora albus, YIM 90003
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