STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOF84596.1Conserved hypothetical protein; [S] COG3159 Uncharacterized protein conserved in bacteria. (227 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
  
    0.955
xerC
Phage integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
    0.922
AOF85168.1
Methyltransferase domain protein; [QR] COG0500 SAM-dependent methyltransferases.
  
     0.711
mreD
shape_MreD: rod shape-determining protein MreD; [M] COG2891 Cell shape-determining protein.
 
     0.696
holA
holA: DNA polymerase III, delta subunit; [L] COG1466 DNA polymerase III, delta subunit.
  
     0.690
lptE
Lipopolysaccharide-assembly family protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
     0.683
AOF85671.1
MJ0042 family finger-like domain protein; MJ0042_CXXC: MJ0042 family finger-like domain protein.
  
    0.674
AOF86137.1
Methyltransferase small domain protein; [R] COG1092 Predicted SAM-dependent methyltransferases.
       0.671
AOF84297.1
Phasin: phasin family domain protein.
  
     0.642
AOF85663.1
hemX family protein; [H] COG2959 Uncharacterized enzyme of heme biosynthesis.
 
    0.635
Your Current Organism:
Hydrogenophaga sp. RAC07
NCBI taxonomy Id: 1842537
Other names: H. sp. RAC07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.