ODM25145.1 protein (Clostridium sp. Bciso3) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ODM25145.1

N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)

Predicted Functional Partners:

ODM26586.1

0.739

ODM27201.1

0.737

ODM25125.1

0.723

ODM25115.1

0.717

ODM27825.1

0.715

ODM26596.1

0.713

ODM26647.1

0.712

ODM25895.1

0.673

ODM26828.1

0.655

ODM25504.1

0.614

Your Current Organism:

Clostridium sp. Bciso3

NCBI taxonomy Id: 1848158
Other names: C. sp. Bc-iso-3, Clostridium sp. Bc-iso-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ODM25115.1	ODM25125.1	A7W90_02120	A7W90_02190	Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
ODM25115.1	ODM25145.1	A7W90_02120	A7W90_02295	Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
ODM25115.1	ODM26586.1	A7W90_02120	A7W90_10335	Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase CwlD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
ODM25125.1	ODM25115.1	A7W90_02190	A7W90_02120	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
ODM25125.1	ODM25145.1	A7W90_02190	A7W90_02295	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ODM25125.1	ODM25504.1	A7W90_02190	A7W90_04270	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
ODM25125.1	ODM25895.1	A7W90_02190	A7W90_06455	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
ODM25125.1	ODM26586.1	A7W90_02190	A7W90_10335	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase CwlD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
ODM25125.1	ODM26596.1	A7W90_02190	A7W90_10390	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
ODM25125.1	ODM26647.1	A7W90_02190	A7W90_10695	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
ODM25125.1	ODM26828.1	A7W90_02190	A7W90_11735	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
ODM25125.1	ODM27201.1	A7W90_02190	A7W90_13815	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
ODM25125.1	ODM27825.1	A7W90_02190	A7W90_17265	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
ODM25145.1	ODM25115.1	A7W90_02295	A7W90_02120	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
ODM25145.1	ODM25125.1	A7W90_02295	A7W90_02190	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ODM25145.1	ODM25504.1	A7W90_02295	A7W90_04270	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
ODM25145.1	ODM25895.1	A7W90_02295	A7W90_06455	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
ODM25145.1	ODM26586.1	A7W90_02295	A7W90_10335	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase CwlD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
ODM25145.1	ODM26596.1	A7W90_02295	A7W90_10390	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
ODM25145.1	ODM26647.1	A7W90_02295	A7W90_10695	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712