SEC66809.1 protein (Streptomyces sp. 22311) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEC66809.1

Acyl-CoA dehydrogenase. (404 aa)

Predicted Functional Partners:

SEC66777.1

0.997

SEE06388.1

0.975

SED50122.1

0.941

SED92104.1

0.934

SEC92088.1

0.931

SED06047.1

0.931

SED92132.1

0.931

SEC79894.1

0.929

SEC36141.1

0.923

SED59271.1

0.923

Your Current Organism:

Streptomyces sp. 22311

NCBI taxonomy Id: 1855347
Other names: S. sp. 2231.1, Streptomyces sp. 2231.1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEC36141.1	SEC66809.1	SAMN05216532_1176	SAMN05216532_2054	acetyl-CoA C-acetyltransferase.	Acyl-CoA dehydrogenase.	0.923
SEC36141.1	SEC79894.1	SAMN05216532_1176	SAMN05216532_2442	acetyl-CoA C-acetyltransferase.	enoyl-CoA hydratase.	0.924
SEC36141.1	SEC92088.1	SAMN05216532_1176	SAMN05216532_2802	acetyl-CoA C-acetyltransferase.	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.912
SEC36141.1	SED06047.1	SAMN05216532_1176	SAMN05216532_3295	acetyl-CoA C-acetyltransferase.	3-methylcrotonyl-CoA carboxylase beta subunit.	0.422
SEC36141.1	SED50122.1	SAMN05216532_1176	SAMN05216532_4747	acetyl-CoA C-acetyltransferase.	enoyl-CoA hydratase.	0.741
SEC36141.1	SED92104.1	SAMN05216532_1176	SAMN05216532_6259	acetyl-CoA C-acetyltransferase.	3-hydroxyacyl-CoA dehydrogenase.	0.991
SEC36141.1	SEE06388.1	SAMN05216532_1176	SAMN05216532_6791	acetyl-CoA C-acetyltransferase.	Short chain enoyl-CoA hydratase.	0.998
SEC66777.1	SEC66809.1	SAMN05216532_2053	SAMN05216532_2054	Predicted kinase, aminoglycoside phosphotransferase (APT) family.	Acyl-CoA dehydrogenase.	0.997
SEC66777.1	SEC79894.1	SAMN05216532_2053	SAMN05216532_2442	Predicted kinase, aminoglycoside phosphotransferase (APT) family.	enoyl-CoA hydratase.	0.825
SEC66777.1	SED50122.1	SAMN05216532_2053	SAMN05216532_4747	Predicted kinase, aminoglycoside phosphotransferase (APT) family.	enoyl-CoA hydratase.	0.821
SEC66777.1	SED92104.1	SAMN05216532_2053	SAMN05216532_6259	Predicted kinase, aminoglycoside phosphotransferase (APT) family.	3-hydroxyacyl-CoA dehydrogenase.	0.720
SEC66777.1	SEE06388.1	SAMN05216532_2053	SAMN05216532_6791	Predicted kinase, aminoglycoside phosphotransferase (APT) family.	Short chain enoyl-CoA hydratase.	0.838
SEC66809.1	SEC36141.1	SAMN05216532_2054	SAMN05216532_1176	Acyl-CoA dehydrogenase.	acetyl-CoA C-acetyltransferase.	0.923
SEC66809.1	SEC66777.1	SAMN05216532_2054	SAMN05216532_2053	Acyl-CoA dehydrogenase.	Predicted kinase, aminoglycoside phosphotransferase (APT) family.	0.997
SEC66809.1	SEC79894.1	SAMN05216532_2054	SAMN05216532_2442	Acyl-CoA dehydrogenase.	enoyl-CoA hydratase.	0.929
SEC66809.1	SEC92088.1	SAMN05216532_2054	SAMN05216532_2802	Acyl-CoA dehydrogenase.	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.931
SEC66809.1	SED06047.1	SAMN05216532_2054	SAMN05216532_3295	Acyl-CoA dehydrogenase.	3-methylcrotonyl-CoA carboxylase beta subunit.	0.931
SEC66809.1	SED50122.1	SAMN05216532_2054	SAMN05216532_4747	Acyl-CoA dehydrogenase.	enoyl-CoA hydratase.	0.941
SEC66809.1	SED59271.1	SAMN05216532_2054	SAMN05216532_5040	Acyl-CoA dehydrogenase.	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.923
SEC66809.1	SED92104.1	SAMN05216532_2054	SAMN05216532_6259	Acyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.934