STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcVInner membrane ABC transporter permease protein YdcV; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern. (269 aa)    
Predicted Functional Partners:
potB
Spermidine/putrescine transport system permease protein PotB; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
0.999
potD
Spermidine/putrescine-binding periplasmic protein precursor; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
 0.999
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.997
puuR_2
HTH-type transcriptional regulator PuuR; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
   
   0.842
cysA
Sulfate/thiosulfate import ATP-binding protein CysA; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; Belongs to the ABC transporter superfamily.
 
  
 0.802
ARQ06591.1
Hypothetical protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
       0.691
ARQ06585.1
Hypothetical protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; Belongs to the UPF0223 family.
       0.573
sugB
Trehalose transport system permease protein SugB; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
   
0.527
ARQ06817.1
Hypothetical protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
   
    0.424
pdhC
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
     
 0.421
Your Current Organism:
Macrococcus canis
NCBI taxonomy Id: 1855823
Other names: CCM 8748, CCOS 969, CCOS:969, CCUG 68920, DSM 101690, M. canis, Macrococcus canis Gobeli Brawand et al. 2017, Macrococcus sp. KM45013, strain KM 45013
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.