STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pobAP-hydroxybenzoate hydroxylase. (394 aa)    
Predicted Functional Partners:
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.988
pcaH_1
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.988
pcaH_2
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.978
pcaR
Pca regulon regulatory protein.
 
   
 0.923
LuPra_04021
Putative metal-dependent hydrolase of the TIM-barrel fold protein.
 
  
 0.922
lcfB_2
Long-chain-fatty-acid--CoA ligase.
 
  
 0.899
catD
3-oxoadipate enol-lactonase 2.
 
  
 0.885
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
   
 0.863
pcaF
Beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.816
fadB
Fatty acid oxidation complex subunit alpha.
 
 
 
 0.795
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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