node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PF0060 | PF1495 | PF0060 | PF1495 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | GTP-binding protein, gtp1/obg family; Function Code: 16 Unknown:. | 0.965 |
PF0060 | PF1580 | PF0060 | PF1580 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | 0.982 |
PF0060 | flpA | PF0060 | PF0059 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | Fibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. | 0.999 |
PF0060 | nep1 | PF0060 | PF1262 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | Hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.977 |
PF0060 | rpl7ae | PF0060 | PF1367 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. Component of the 70S ribosome. Component of a box C/D small ribonucleoprotein (sRNP) particle that is involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site- specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic d [...] | 0.999 |
PF0060 | rps11 | PF0060 | PF1648 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.986 |
PF0060 | rps4 | PF0060 | PF1649 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.982 |
PF0060 | rps6e | PF0060 | PF0488 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | Function Code: 13.4 Translation: Ribosomal proteins: synthesis and modification; (rps6E). | 0.996 |
PF0060 | tmcA | PF0060 | PF0504 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | DNA helicase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.993 |
PF0060 | truB | PF0060 | PF1785 | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | Centromere binding protein homolog/pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs. | 0.993 |
PF1495 | PF0060 | PF1495 | PF0060 | GTP-binding protein, gtp1/obg family; Function Code: 16 Unknown:. | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | 0.965 |
PF1495 | PF1580 | PF1495 | PF1580 | GTP-binding protein, gtp1/obg family; Function Code: 16 Unknown:. | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | 0.682 |
PF1495 | flpA | PF1495 | PF0059 | GTP-binding protein, gtp1/obg family; Function Code: 16 Unknown:. | Fibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. | 0.863 |
PF1495 | nep1 | PF1495 | PF1262 | GTP-binding protein, gtp1/obg family; Function Code: 16 Unknown:. | Hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.445 |
PF1495 | rpl7ae | PF1495 | PF1367 | GTP-binding protein, gtp1/obg family; Function Code: 16 Unknown:. | LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. Component of the 70S ribosome. Component of a box C/D small ribonucleoprotein (sRNP) particle that is involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site- specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic d [...] | 0.799 |
PF1495 | rps11 | PF1495 | PF1648 | GTP-binding protein, gtp1/obg family; Function Code: 16 Unknown:. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.481 |
PF1495 | tmcA | PF1495 | PF0504 | GTP-binding protein, gtp1/obg family; Function Code: 16 Unknown:. | DNA helicase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.926 |
PF1495 | truB | PF1495 | PF1785 | GTP-binding protein, gtp1/obg family; Function Code: 16 Unknown:. | Centromere binding protein homolog/pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs. | 0.783 |
PF1580 | PF0060 | PF1580 | PF0060 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | NOP5/NOP56 related protein; Function Code: 12.3 Transcription: RNA processing. | 0.982 |
PF1580 | PF1495 | PF1580 | PF1495 | Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. | GTP-binding protein, gtp1/obg family; Function Code: 16 Unknown:. | 0.682 |