STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PF0354Hypothetical protein; Function Code: 16.1 Conserved Hypothetical. (267 aa)    
Predicted Functional Partners:
PF1233
Putative chitinase; Function Code: 5.1 Central Intermediary Metabolism: Degradation of polysaccharides.
     
 0.782
PF0363
Beta-galactosidase precursor; Function Code: 5.1 Central Intermediary Metabolism: Degradation of polysaccharides.
     
 0.734
cysS
cysteinyl-tRNA synthetase; Function Code: 13.1 Translation: Amino acyl tRNA synthetases.
  
  
 0.548
PF0353
Hypothetical protein; Function Code: 16.1 Conserved Hypothetical.
       0.545
PF1626
Hypothetical protein; Function Code: 16.1 Conserved Hypothetical.
 
     0.496
PF2044
Glycogen synthase; Function Code: 3.2 Cell Envelope: Surface polysaccharides, lipopolysaccharides and antigens; (starch).
 
     0.453
PF0362
Glucosamine-fructose-6-phosphate aminotransferase; Function Code: 3.2 Cell Envelope: Surface polysaccharides, lipopolysaccharides and antigens.
     
 0.442
uppS
Undecaprenyl diphosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
     
 0.441
cmr1-2
Hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA), formerly called psiRNA (prokaryotic silencing) in this organism. Part of the Cmr ribonucleoprotein complex which has divalent cation- dependent endoribonuclease activity spec [...]
 
     0.431
PF1132
Putative carbamoyl transferase; Function Code: 16 Unknown:.
     
 0.429
Your Current Organism:
Pyrococcus furiosus
NCBI taxonomy Id: 186497
Other names: P. furiosus DSM 3638, Pyrococcus furiosus DSM 3638, Pyrococcus furiosus str. DSM 3638, Pyrococcus furiosus strain DSM 3638
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