node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PF0687 | PF0933 | PF0687 | PF0933 | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | 0.873 |
PF0687 | PF1564 | PF0687 | PF1564 | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | DNA-directed RNA polymerase subunit b; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.874 |
PF0687 | rpoD | PF0687 | PF1647 | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | DNA-directed RNA polymerase subunit d; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family. | 0.875 |
PF0687 | rpoH | PF0687 | PF1565 | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | DNA-directed RNA polymerase subunit h; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.862 |
PF0687 | rpoK | PF0687 | PF1642 | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | DNA-directed RNA polymerase subunit k; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.847 |
PF0687 | rpoN | PF0687 | PF1643 | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | DNA-directed RNA polymerase subunit n; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. | 0.876 |
PF0687 | rpoP | PF0687 | PF2009 | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | 0.862 |
PF0687 | tbp | PF0687 | PF1295 | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (By similarity). | 0.945 |
PF0687 | tfb | PF0687 | PF1377 | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | Transcription initiation factor IIB chain b; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). | 0.903 |
PF0687 | tfe | PF0687 | PF0491 | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | Transcription initiation factor TFIIE; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation co [...] | 0.876 |
PF0933 | PF0687 | PF0933 | PF0687 | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | Function Code: 12.2 Transcription: Transcription factors; (TFIIB). | 0.873 |
PF0933 | PF1564 | PF0933 | PF1564 | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | DNA-directed RNA polymerase subunit b; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.982 |
PF0933 | rpoD | PF0933 | PF1647 | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | DNA-directed RNA polymerase subunit d; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family. | 0.996 |
PF0933 | rpoH | PF0933 | PF1565 | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | DNA-directed RNA polymerase subunit h; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.994 |
PF0933 | rpoK | PF0933 | PF1642 | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | DNA-directed RNA polymerase subunit k; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.989 |
PF0933 | rpoN | PF0933 | PF1643 | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | DNA-directed RNA polymerase subunit n; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. | 0.989 |
PF0933 | rpoP | PF0933 | PF2009 | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | 0.994 |
PF0933 | tbp | PF0933 | PF1295 | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (By similarity). | 0.973 |
PF0933 | tfb | PF0933 | PF1377 | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | Transcription initiation factor IIB chain b; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). | 0.872 |
PF0933 | tfe | PF0933 | PF0491 | DNA repair helicase rad3, putative; Function Code: 11.1 Replication: DNA replication, restriction, modification, recombination, and repair. | Transcription initiation factor TFIIE; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation co [...] | 0.988 |