STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PF1092Function Code: 16.4 Hypothetical. (389 aa)    
Predicted Functional Partners:
PF1090
Putative ABC transporter (ATP-binding protein); Function Code: 14.1 Transport and Binding Proteins: General.
       0.773
PF1091
Function Code: 16.4 Hypothetical.
       0.773
PF1093
Function Code: 16.4 Hypothetical.
       0.773
PF1088
Hypothetical protein; Function Code: 16.1 Conserved Hypothetical.
       0.594
PF1089
Hypothetical protein; Function Code: 16.1 Conserved Hypothetical.
       0.594
PF1086
Hypothetical protein; Function Code: 16.1 Conserved Hypothetical.
       0.518
PF1087
Hypothetical protein; Function Code: 16.1 Conserved Hypothetical; Belongs to the PDCD5 family.
       0.518
PF1094
Function Code: 16.4 Hypothetical.
       0.477
Your Current Organism:
Pyrococcus furiosus
NCBI taxonomy Id: 186497
Other names: P. furiosus DSM 3638, Pyrococcus furiosus DSM 3638, Pyrococcus furiosus str. DSM 3638, Pyrococcus furiosus strain DSM 3638
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