STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900104605_00336Unannotated protein. (213 aa)    
Predicted Functional Partners:
GCA_900104605_00337
Unannotated protein.
     0.951
GCA_900104605_00335
Unannotated protein.
    
 0.764
GCA_900104605_01525
Unannotated protein.
  
 
  0.666
GCA_900104605_00046
Unannotated protein.
    
   0.634
GCA_900104605_00334
Unannotated protein.
     
 0.556
GCA_900104605_00338
Unannotated protein.
       0.476
GCA_900104605_00821
Unannotated protein.
     
 0.449
GCA_900104605_01215
Unannotated protein.
  
     0.418
GCA_900104605_00822
Unannotated protein.
     
 0.408
Your Current Organism:
Tidjanibacter massiliensis
NCBI taxonomy Id: 1871003
Other names: Alistipes sp. Marseille-P3084, CSUR P3084, DSM 103552, T. massiliensis, strain Marseille-P3084
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.